Tag Archives: RAID

Enabling Infiniband on Ububtu 10.10

I do mention in my tagline that this blog may contain some information about computers, so you’ve been warned. The following article is quite technical, and may not be of interest to the photography contingent that might otherwise be interested in my blog articles. I posted this because I spent several days attempting a particular task, and managed to get it down to a few simple instructions. It may be useful for other attempting the same task.

I’ve recently set up an Infiniband fabric at home, and had a lot of trouble getting it working on Ubuntu. Windows 7 was a breeze, I just instlled the OFED drivers from openfbrics.org.
Here’s the steps to get it working on Ubuntu 10.10. It might not seem a lot, but there was a lot of messing to get it down to these few steps.

Install Ubuntu. Everything below is done as root – “sudo bash”.
Add a file to /etc/udev/rules.d called, say, 99-udev-umad.rules. This will cause the correct entries to be created in /sys, which otherwise do not get created for Ubuntu 10.10.
Insert the following:

KERNEL==”umad*”, NAME=”infiniband/%k”, MODE=”0666″
KERNEL==”issm*”, NAME=”infiniband/%k”, MODE=”0666″

Edit /etc/modules and add the following modules:

ib_sa
ib_cm
ib_umad
ib_addr
ib_uverbs
ib_ipoib
ib_ipath
ib_qib

Next, “apt-get install opensm”. This will install the subnet manager and all the relevant dependencies, libibverbs, etc.

Then add the relevant entries for the interface into /etc/network/interfaces file:

auto ib0
iface ib0 inet static
address 192.168.1.1
netmask 255.255.255.0

Then reboot. This will create the relevant infiniband entries in /sys, load the ipoib modules, and bring up the infiniband port with an ip address.

You should now have a functioning infiniband port on your Ubuntu machine.

However, there is still some more investigation to be done. Initially, when I was mixing custom kernels with OFED drivers, and stock linux kernel drivers, netperf was showing 7 gbps throughput. With the configurtation above, it’s down at about 25 mbps. Dreadfully slow. I’ll have to find out what optimisations are needed (or other drivers) in order to get the speed back up to 7 gbps.

–EDIT–

Note: iperf maxed out at 1.2 gbps, and on the current linux install, I couldnt get netperf client working at all. netserver would work, but only showed a throughput of 25mbps from a Win7 client. HOWEVER, when I set up the raid with 6 old 160G drives, the “hdparm -t /dev/md0p1″ showed 250MB/sec reads, and I got the same from the Win7 machine using samba across the infiniband fabric. This seems to indicate that iperf and netperf are completely unreliable for testing this type of connection. Bear in mind though that I did have netperf running on the previous ubuntu install, but that installation was so messy I don’t know what drivers and user-space software was running. I reckon it’s the kind of think that may be fixed in the stock Ubuntu install in the near future. For the moment, just go with real-world testing, i.e. copying large files from ramdisk to ramdisk, for example.

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Infiniband at Home (10Gb networking on the cheap)

Would you like to have over 700MB/sec throughput  between your PCs at home for under €110? That’s like a full CD’s worth of data every second! If you do, then read on….

–edit–

Since this article was originally written, I’ve found the real-world throughput of infiniband from a windows machine and an ubuntu machine gives me a max of 135MB/sec, just under twice my 1gbps ethernet (75MB.sec). Thats with a raid array capable of 350MB/sec on the linux side, feeding a samba link to the windows machine at 95% CPU. So, it falls a lot short of the desired 700MB/sec that I thought may be possible. It’s not possible with IP over Infininband. And iSER isnt available on windows, so no SRP targets could be used, which uses RDMA. So a whole lotta research leading to block walls and 135MB/sec max.

—end edit—

With the increasing amout of data that I have to manage on my computers at home, I started looking into a faster way of moving data around the place. I started with a RAID array in my PC, which gives me read-write speeds of 250MB/sec. Not being happy with that, I looked a creating a bigger external array, with more disks, for faster throughput. I happened to have a decent linux box sitting there doing very little. It had a relatively recent motherboard , and 8 SATA connectors.  But no matter how fast I got the drives in that linux box to go, I’d always be limited by the throughput of the 1Gb ethernet network between the machines, so I researched several different ways of inter-PC communication that might break the 1gbps barrier. The 1GB ethernet was giving me about 75MB/sec throughput.

The first I looked at was USB 3.0 (5 gbit/s). While that’s very good for external hard drives, there didnt seem to be a decent solution out there for allowing multiple drives to be added together to increase throughput. We are now starting to see raid boxes appear with USB3.0 interfaces, but they are still quite expensive. To connect my existing linux box to my windows desktop, I’d need a card with a USB 3.0 slave port so that the external array would look like one big drive, and max out the 5Gbps bandwidth of a USB 3.0 link . However, these do not seem to exist, so I moved onto the next option.

Then I moved on to 10G Ethernet (10 gbit/s). One look at the prices here and I immediately ruled it out. Several hundred Euro for a single adapter.

Fibre channel (2-8 gbit/s). Again the pricing was prohibitive, especially for the higher throughput cards. Even the 2Gbps cards were expensive, and would not give me much of a boost over 1Gbps ethernet.

Then came Infiniband (10-40 gbit/s). I came across this while looking through the List of Device Bit Rates page on Wikipedia. I had heard of it as an interconnect in cluster environments and high-end data-centres. I also assumed that the price would be prohibitive. A 10G adapter would theoretically give up to a Gigabyte per second throughput between the machines. However, I wasn’t ruling it out until I had a look on eBay at a few prices. To my surprise, there was a whole host of adapters available ranging from several hundred dollars down to about fifty dollars. $50? for a 10Gig adapter?   Surely this couldn’t be right. I looked again, and I spotted some dual port Mellanox MHEA28-XTC cards at $35.99. This worked out at about €27 per adapter, plus €25 shipping. Incredible, if I could get it to work. I’d also read that it is possible to use a standard infiniband cable to directly connect two machines together without a switch, saving me about €700 in switch costs. If I wanted to bring another machine into the Infiniband fabric, though, I’d have to bear that cost. For the moment, two machines directly connected was all I needed.

With a bit more research, I found that drivers for the card were available for Windows 7 and Linux from OpenFabrics.org, so I ordered 2 cards from the U.S. and a cable from Hong Kong.

About 10 days later the adapters arrived. I installed one adapter in the Windows 7 machine. Windows initially failed to find a driver, so I then went on the OpenFabrics.org website and downloaded OFED_2-3_win7_x64.zip. After installation I  had two new network connections available in windows (the adapter was dual-port), ready for me to connect to the other machine.

Next I moved onto the Linux box. I won’t even start with the hassle I had to install the card in my linux box. After days of research, driver installation, kernel re-compilation, driver re-compilation, etc. etc., etc., etc., I eventually tried swapping the slot that I had the card plugged into. Low and below, the f&*cking thing worked. So, my mother board has two PCI-Ex16 slots, and the infiniband adapter would work in one, but not in the other. Who would have thought. All I had to do then was assign an IP address to it. –EDIT– here’s a quick HOWTO on getting the fabric up on Ubuntu 10.10. About 10 minutes should get it working – http://davidhunt.ie/wp/?p=375 –EDIT–

Without a cable (it still had not arrived from Hong Kong), all I could do was sit there and wait until it arrived to test the setup. Would the machines be able to feed the cards fast enough to get a decent throughput? On some forums I’d seen throughput tests of 700MB/sec. Would I get anywhere close to that with a 3GHz dual core athlon to a 3GHz i7 950?

A few days later, the cable arrived. I connected the cable into each machine, and could immediately send pings between the machines. I’d previously assigned static IP addresses to the infiniband ports on each machine. I wasn’t able to run “netperf”, as it didn’t see the cards as something it could put traffic through. So I upgraded the firmware on the cards, which several forums said would improve throughput and compatibility. Iwas then able to run netperf, with the following results:

root@raid:~# netperf -H 10.4.12.1
TCP STREAM TEST from 0.0.0.0 (0.0.0.0) 
port 0 AF_INET to 10.4.12.1 (10.4.12.1)
port 0 AF_INET : demo
Recv   Send   Send
Socket Socket Message Elapsed
Size   Size   Size    Time     Throughput
bytes  bytes  bytes   secs.    10^6bits/sec
87380  16384  16384   10.00    7239.95

That’s over 7 gigabits/sec, or over 700MB/sec throughput between the two machines!

So, I now have an Infiniband Fabric working at home, with over 7 gigabit throughput between PCs. The stuff of high-end datacentres in my back room. The main thing is that you don’t need a switch, so a PC to PC 10-gigabit link CAN be achieved for under €110! Here’s the breakdown:

2 x Mellanox MHEA28-XTC infiniband HCA’s @ $34.99 + shippping = $113 (€85)

1 x 3m Molex SFF-8470 infiniband cable incl shipping = $29 (€22)

Total: $142 (€107)

The next step is to set up a raid array with several drives and stripe them so they all work in parallel, and maybe build it in such a way if one or two drives fail, it will still be recoverable (raid 5/6). More to come on that soon.

References:
http://hardforum.com/showthread.php?p=1036510049
http://www.zdnet.com/blog/storage/build-a-10-gbit-home-network-for-1100/284
http://www.gossamer-threads.com/lists/drbd/users/19594
http://www.mellanox.com
http://www.openfabrics.org

 

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More RAID Wonderfulness…

With the increase in the amount of data taken up by images on my PC data throughput has become a real problem. Dozens of seconds to load and save files, not to mention 25 seconds to open Photoshop. Each image I take of my camera is 25-30MB, and when I am working on a file, it can be 600-800MB for a few days until I’m happy with it and compress it down to a flattened image at about 100MB. Loading and saving these files can take up to a minute on my PC.

I started looking into increasing the performance of editing images on my PC. The main prompt was the fact that my 1TB drive in my pc crashed (I had 3 backups so nothing lost). I took a look at what the main bottlenecks were, and it seemed that disk speed was one of the main problems. Having discussed RAID systems in a previous post, I thought I’d investigate setting up a striped array as a second drive on my desktop. Striping allows two disks to be “merged” showing up as 1 disk to windows, but the underlying writes are spread across each disk, theoretically doubling the read/write performance.

First of all I discovered that Windows 7 now includes software RAID, and the benchmarks on the web showed that the speeds were very similar to the motherboard RAID solutions for both RAID 1 and RAID 0 (Mirroring and Striping), so I had a go at that. Well into the process of copying about 800GB of data around the place to make two spare drives, I found that only Windows 7 Professional and Windows 7 Ultimate allow RAID configurations. I’ve got Windows 7 Home Premuim, which DOES NOT have RAID functionality. Bummer.

Then I took a closer look at my motherboard, and it has a RAID controller built in. But there was a problem, I couldnt enable the RAID controller in the BIOS without causing my current windows installation to give me a BSOD (Blue Screen of Death) at boot. Even the solution suggested by Microsoft didnt help, so I freed up another 500G SATA drive and installed a fresh copy of Windows 7 on it, after enabling the RAID controller on the motherboard. It was very particular about the BIOS settings to get windows recognising the SATA CD-ROM drive and the hard disk. Anyway, once I got the settings right, I installed Windows and the nVidia RAID software.

Then, I installed my two 1TB drives (Seagate Baracuda 7200.12′s, €80 each in Maplin), and kicked off the nVidia storage manager. This is quite a neat piece of software that allows easy configuration of arrays based on spare disks in the system. I started a couple of self tests on the disks, which checked out healthy. I chose not to migrate any existing data, so the new striped array was created in seconds in the nVidia storage manger. Then using the Disk Manager in windows to create a couple of partitions on that disk, which again, took seconds, I started up the ATTO Disk Benchmark Utility. Previously I had tested the Seagate disks individually, giving me a max speed of about  125MB/sec. With the new striped array, this was increased to 247MB/sec! Success.

ATTO Benchmark for Striped 1TB Seagate Baracuda 7200.12′s

Because it’s a striped disk, I need to be very careful to have a good backup policy, because if one of the disks in the array goes, I lose ALL the data. If youwant data security, dont use RAID 0 (striping).

Now to install Photoshop CS4, then the CS5 upgrade, and restore my photos onto it and see what kind of performance improvement I get in general use editing pictures. I don’t expect the actual processing to be much quicker. but organising images in bridge, generating previews, loading/saving large TIFFs should all be improved.

Once Photoshop was installed, I started it up, it took about 8 seconds. Closing and opening again took about 4 seconds. This is an improvement from about 25 seconds from cold with my old 80MB/sec boot drive.

Adobe bridge seems a lot snappier now, with previews loading much quicker. Also, I can now save a 1GB TIFF file in under 10 seconds. I reckon this will save me a several days over the course of a year :)

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Backing Up Photos

I just embarked on an project to make backing up photos easier, and decided I wanted to get myself set up with a RAID array. This would allow me to copy my photos once to the array, and it would then automatically create a mirror of each file on the disks, so I’d be backing up twice without even thinking about it.

I’ve known about RAID (Redundant Array of Independent Disks) for quite a while now, and also use them at work, but those types start at $15,000, and go up from there. I’m on a much more modest budget, and even the €350 upwards models on the internet seemed a bit steep, so I decided to build my own. Initially, I thought I’d use a motherboard with built-in RAID, or get a RAID controller for the PC, then stick in a few disks. After researching a bit, I found that RAID controllers can be got for as little as $30 on E–Bay, but there’s limitations in the size of disk you can use with the older ones, and the more recent ones cost a good bit more, maybe $70 upwards to $600 for the top-of-the-range cards.

Being even stingier than that, I then looked at the motherboards I had lying around the house. My desktop was full, the kids PC had RAID on the motherboard, but it’s reputation when it comes to RAID was awful. I then checked my media centre PC, and sure enough, there were 4 SATA connectors, and 2 IDE connectors. Enough for 8 drives. But the motherboard didnt seem to have any hardware RAID. So, if it wasnt there, could I do it in software? Seeing as it’s already got Linux (Ubuntu), I looked up software raid solutions for linux, and there it was in the form of ‘mdadm’. This magical command allows setting up of all types of RAID arrays with a few quick commands. To test this out, I salvaged a couple of old 80Gig SATA drives from my garage, and stuck them in the box. An hour later, I had a new 80Gig volume mounted in the linux box, and accessible over the network via Samba. The two drives were set up as a mirror, so I lose half the capacity of the combined drives, but it’s redundancy I want for this setup, not speed.

The next step is to replace the 80Gig drives with a few 1-2TB drives. Who know, I might even go the whole hog and use 3 or more drives in a RAID 4 or RAID 5 array. That should give me faster access, as well as the redundancy that is an essential part of this project.

Another thing is that I need to know when there’s a problem with the array. The array should still function when one of the drives fail, and will re-build the array when I replace that failed drive. But how do I know when a drive has failed? I don’t want to have to check it every week (or day). Well, there’s very handy feature of the Linux Software RAID solution that monitors the disks in the array and can be set up to automatically send an email when there’s a problem. Nice.

Once I actually get the drives, I’ll then have to upgrade the link between the desktop and the media centre PC upgraded to gigabit ethernet so I have nice fast access to the array.  I’ll keep ye posted…

That’s it for now.
Cheers,
Dave.

Refs:
RAID - http://en.wikipedia.org/wiki/RAID
mdadm - http://en.wikipedia.org/wiki/Mdadm

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